This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by GNU Autoconf configure 2.69, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ ./configure 

## --------- ##
## Platform. ##
## --------- ##

hostname = search6.di.uminho.pt
uname -m = x86_64
uname -r = 2.6.32-279.14.1.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Tue Nov 6 23:43:09 UTC 2012

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/lib64/qt-3.3/bin
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /sbin
PATH: /bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /opt/bio/ncbi/bin
PATH: /opt/bio/mpiblast/bin
PATH: /opt/bio/EMBOSS/bin
PATH: /opt/bio/clustalw/bin
PATH: /opt/bio/tcoffee/bin
PATH: /opt/bio/hmmer/bin
PATH: /opt/bio/phylip/exe
PATH: /opt/bio/mrbayes
PATH: /opt/bio/fasta
PATH: /opt/bio/glimmer/bin
PATH: /opt/bio/glimmer/scripts
PATH: /opt/bio/gromacs/bin
PATH: /opt/bio/gmap/bin
PATH: /opt/bio/tigr/bin
PATH: /opt/bio/autodocksuite/bin
PATH: /opt/bio/wgs/bin
PATH: /opt/eclipse
PATH: /opt/ganglia/bin
PATH: /opt/ganglia/sbin
PATH: /usr/java/latest/bin
PATH: /opt/maven/bin
PATH: /opt/maui/bin
PATH: /opt/torque/bin
PATH: /opt/torque/sbin
PATH: /opt/pdsh/bin
PATH: /opt/rocks/bin
PATH: /opt/rocks/sbin
PATH: /root/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1796: checking for a BSD-compatible install
configure:1864: result: /usr/bin/install -c
configure:1875: checking whether build environment is sane
configure:1925: result: yes
configure:2066: checking for a thread-safe mkdir -p
configure:2105: result: /bin/mkdir -p
configure:2118: checking for gawk
configure:2134: found /bin/gawk
configure:2145: result: gawk
configure:2156: checking whether make sets $(MAKE)
configure:2178: result: yes
configure:2263: checking build system type
configure:2277: result: x86_64-unknown-linux-gnu
configure:2297: checking host system type
configure:2310: result: x86_64-unknown-linux-gnu
configure:2337: autobuild project... GNU Autoconf
configure:2343: autobuild revision... 2.69
configure:2348: autobuild hostname... search6.di.uminho.pt
configure:2359: autobuild timestamp... 20180228T102604Z
configure:2387: checking whether /bin/sh -n is known to work
configure:2406: result: yes
configure:2410: checking for characters that cannot appear in file names
configure:2430: result: none
configure:2436: checking whether directories can have trailing spaces
configure:2450: result: yes
configure:2461: checking for expr
configure:2479: found /usr/bin/expr
configure:2491: result: /usr/bin/expr
configure:2510: checking for GNU M4 that supports accurate traces
configure:2559: result: /usr/bin/m4
configure:2562: checking whether /usr/bin/m4 accepts --gnu
configure:2572: result: yes
configure:2589: checking how m4 supports trace files
configure:2599: result: --debugfile
configure:2623: checking for perl
configure:2641: found /usr/bin/perl
configure:2654: result: /usr/bin/perl
configure:2673: checking whether /usr/bin/perl Fcntl::flock is implemented
configure:2687: result: yes
configure:2705: checking for emacs
configure:2721: found /usr/bin/emacs
configure:2732: result: emacs
configure:2750: checking whether emacs is sufficiently recent
configure:2760: $TEST_EMACS -batch -q -f batch-byte-compile conftest.el 1>&2
Loading /usr/share/emacs/site-lisp/site-start.d/cmake3-init.el (source)...
Loading /usr/share/emacs/site-lisp/site-start.d/focus-init.el (source)...
Loading /usr/share/emacs/site-lisp/site-start.d/php-mode-init.el (source)...
Loading /usr/share/emacs/site-lisp/site-start.d/po-mode-init.el (source)...
Loading /usr/share/emacs/site-lisp/site-start.d/rpm-spec-mode-init.el (source)...

In broken-mode:
conftest.el:2:35:Warning: assignment to free variable `broken-defaults'
Wrote /share/apps/software/autoconf-2.69/conftest.elc
configure:2763: $? = 0
configure:2771: result: yes
configure:2788: checking for emacs
configure:2815: result: emacs
configure:2839: checking where .elc files should go
configure:2852: $EMACS -batch -q -eval '(while load-path (princ (concat (car load-path) "\n")) (setq load-path (cdr load-path)))' </dev/null >conftest.out
Loading /usr/share/emacs/site-lisp/site-start.d/cmake3-init.el (source)...
Loading /usr/share/emacs/site-lisp/site-start.d/focus-init.el (source)...
Loading /usr/share/emacs/site-lisp/site-start.d/php-mode-init.el (source)...
Loading /usr/share/emacs/site-lisp/site-start.d/po-mode-init.el (source)...
Loading /usr/share/emacs/site-lisp/site-start.d/rpm-spec-mode-init.el (source)...
configure:2855: $? = 0
configure:2868: result: ${datarootdir}/emacs/site-lisp
configure:2881: checking for grep that handles long lines and -e
configure:2939: result: /bin/grep
configure:2944: checking for egrep
configure:3006: result: /bin/grep -E
configure:3011: checking for a sed that does not truncate output
configure:3075: result: /bin/sed
configure:3085: checking whether make is case sensitive
configure:3100: result: yes
configure:3279: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by GNU Autoconf config.status 2.69, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on search6.di.uminho.pt

config.status:797: creating tests/Makefile
config.status:797: creating tests/atlocal
config.status:797: creating man/Makefile
config.status:797: creating lib/emacs/Makefile
config.status:797: creating Makefile
config.status:797: creating doc/Makefile
config.status:797: creating lib/Makefile
config.status:797: creating lib/Autom4te/Makefile
config.status:797: creating lib/autoscan/Makefile
config.status:797: creating lib/m4sugar/Makefile
config.status:797: creating lib/autoconf/Makefile
config.status:797: creating lib/autotest/Makefile
config.status:797: creating bin/Makefile
config.status:1000: executing tests/atconfig commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_dir_trailing_space=yes
ac_cv_env_EMACSLOADPATH_set=
ac_cv_env_EMACSLOADPATH_value=
ac_cv_env_EMACS_set=
ac_cv_env_EMACS_value=
ac_cv_env_M4_set=
ac_cv_env_M4_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_EXPR=/usr/bin/expr
ac_cv_path_GREP=/bin/grep
ac_cv_path_M4=/usr/bin/m4
ac_cv_path_PERL=/usr/bin/perl
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_perl_flock_implemented=yes
ac_cv_prog_AWK=gawk
ac_cv_prog_EMACS=emacs
ac_cv_prog_TEST_EMACS=emacs
ac_cv_prog_emacs_ok=yes
ac_cv_prog_gnu_m4_debugfile=--debugfile
ac_cv_prog_gnu_m4_gnu=yes
ac_cv_prog_make_make_case=yes
ac_cv_prog_make_make_set=yes
ac_cv_sh_n_works=yes
ac_cv_unsupported_fs_chars=
am_cv_lispdir='${datarootdir}/emacs/site-lisp'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /share/apps/software/autoconf-2.69/build-aux/missing --run aclocal-1.11'
AMTAR='${SHELL} /share/apps/software/autoconf-2.69/build-aux/missing --run tar'
AUTOCONF='${SHELL} /share/apps/software/autoconf-2.69/build-aux/missing --run autoconf'
AUTOHEADER='${SHELL} /share/apps/software/autoconf-2.69/build-aux/missing --run autoheader'
AUTOMAKE='${SHELL} /share/apps/software/autoconf-2.69/build-aux/missing --run automake-1.11'
AWK='gawk'
CYGPATH_W='echo'
DEFS='-DPACKAGE_NAME=\"GNU\ Autoconf\" -DPACKAGE_TARNAME=\"autoconf\" -DPACKAGE_VERSION=\"2.69\" -DPACKAGE_STRING=\"GNU\ Autoconf\ 2.69\" -DPACKAGE_BUGREPORT=\"bug-autoconf@gnu.org\" -DPACKAGE_URL=\"http://www.gnu.org/software/autoconf/\" -DPACKAGE=\"autoconf\" -DVERSION=\"2.69\"'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EMACS='emacs'
EMACSLOADPATH=''
EXPR='/usr/bin/expr'
GREP='/bin/grep'
HELP2MAN='${SHELL} /share/apps/software/autoconf-2.69/build-aux/missing --run help2man'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
M4='/usr/bin/m4'
M4_DEBUGFILE='--debugfile'
M4_GNU='--gnu'
MAKEINFO='${SHELL} /share/apps/software/autoconf-2.69/build-aux/missing --run makeinfo'
MAKE_CASE_SENSITIVE_FALSE='#'
MAKE_CASE_SENSITIVE_TRUE=''
MKDIR_P='/bin/mkdir -p'
PACKAGE='autoconf'
PACKAGE_BUGREPORT='bug-autoconf@gnu.org'
PACKAGE_NAME='GNU Autoconf'
PACKAGE_STRING='GNU Autoconf 2.69'
PACKAGE_TARNAME='autoconf'
PACKAGE_URL='http://www.gnu.org/software/autoconf/'
PACKAGE_VERSION='2.69'
PATH_SEPARATOR=':'
PERL='/usr/bin/perl'
PERL_FLOCK='yes'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP=''
TEST_EMACS='emacs'
VERSION='2.69'
ac_cv_dir_trailing_space='yes'
ac_cv_sh_n_works='yes'
ac_cv_unsupported_fs_chars=''
am__isrc=''
am__leading_dot='.'
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /share/apps/software/autoconf-2.69/build-aux/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
lispdir='${datarootdir}/emacs/site-lisp'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "GNU Autoconf"
#define PACKAGE_TARNAME "autoconf"
#define PACKAGE_VERSION "2.69"
#define PACKAGE_STRING "GNU Autoconf 2.69"
#define PACKAGE_BUGREPORT "bug-autoconf@gnu.org"
#define PACKAGE_URL "http://www.gnu.org/software/autoconf/"
#define PACKAGE "autoconf"
#define VERSION "2.69"

configure: exit 0